nf-core/hmmer/hmmbuild @ 0.0.0-0c7146d
Summary
create an hmm profile from a multiple sequence alignment
Get started
Add the following snippet to your workflow script to include this module.
include { HMMER_HMMBUILD } from 'nf-core/hmmer/hmmbuild'
License
MIT License
Process
Name
|
HMMER_HMMBUILD |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
alignment
file
|
multiple sequence alignment in fasta, clustal, stockholm or phylip format *
|
mxfile
file
|
read substitution score matrix, for use when building profiles from single sequences (--singlemx option) *
|
|---|
Output
3 channels
#1
hmm
tuple
meta
file
|
Gzipped HMM file *.{hmm.gz}
|
|---|---|
*.hmm.gz
file
|
Gzipped HMM file *.{hmm.gz}
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
#3
hmmbuildout
*.hmmbuild.txt
file
|
HMM build output |
|---|
| Tool | Description | Homepage |
|---|---|---|
| hmmer | Biosequence analysis using profile hidden Markov models | http://hmmer.org |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:09:40 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fhmmer%2Fhmmbuild/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/hmmer/hmmbuild/blobs/sha256:54b0112c170681ddb90cb4a64b535fd9e7d867f7731df1ae6e006d7f76cf97b2 |
| Size | 2.6 KB |
| Checksum | sha256:54b0112c170681ddb90cb4a64b535fd9e7d867f7731df1ae6e006d7f76cf97b2 |
| Downloads | 2 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:24:18 (UTC) | 3 | 2.6 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:09:40 (UTC) | 2 | 2.6 KB |