Nextflow Registry | nf-core/hmmer/hmmbuild@0.0.0-6c4ed3a

nf-core/hmmer/hmmbuild @ 0.0.0-6c4ed3a

create an hmm profile from a multiple sequence alignment

search hidden Markov model HMM hmmer hmmsearch

Latest version: 0.0.0-6c4ed3a

Total downloads: 5

Source: nf-core/modules

Authors: @erikrikarddaniel

Maintainers: @erikrikarddaniel

create an hmm profile from a multiple sequence alignment

Add the following snippet to your workflow script to include this module.

include { HMMER_HMMBUILD } from 'nf-core/hmmer/hmmbuild'

MIT License

Process

`Name`	`HMMER_HMMBUILD`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`alignment` file	multiple sequence alignment in fasta, clustal, stockholm or phylip format `*`

`mxfile` file	read substitution score matrix, for use when building profiles from single sequences (--singlemx option) `*`

Output 3 channels

#1 hmm tuple

`meta` file	Gzipped HMM file `*.{hmm.gz}`
`*.hmm.gz` file	Gzipped HMM file `*.{hmm.gz}`

#2 versions

`versions.yml` file	File containing software versions `versions.yml`

#3 hmmbuildout

`*.hmmbuild.txt` file	HMM build output

Tool	Description	Homepage
hmmer	Biosequence analysis using profile hidden Markov models	http://hmmer.org

Version	0.0.0-6c4ed3a
Commit ID	6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date	23 Apr 2026 15:24:18 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Fhmmer%2Fhmmbuild/0.0.0-6c4ed3a/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/hmmer/hmmbuild/blobs/sha256:63c2b6b86b413489d539e2e61b84cf4e184c59c125d2d22fa93910f89456e529
Size	2.6 KB
Checksum	sha256:63c2b6b86b413489d539e2e61b84cf4e184c59c125d2d22fa93910f89456e529
Downloads	3

Version	Date	Status	Downloads	Size
0.0.0-6c4ed3a	23 Apr 2026 15:24:18 (UTC)		3	2.6 KB
0.0.0-0c7146d	08 Apr 2026 19:09:40 (UTC)		2	2.6 KB