nf-core/maltextract @ 0.0.0-6c4ed3a
Summary
Tool for evaluation of MALT results for true positives of ancient metagenomic taxonomic screening
Get started
Add the following snippet to your workflow script to include this module.
include { MALTEXTRACT } from 'nf-core/maltextract'
License
MIT License
Process
Name
|
MALTEXTRACT |
|---|
Input
3 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
rma6
file
|
RMA6 files from MALT *.rma6
|
taxon_list
file
|
List of target taxa to evaluate *.txt
|
|---|
ncbi_dir
directory
|
Directory containing NCBI taxonomy map and tre files ${ncbi_dir}/
|
|---|
Output
2 channels
#1
results
tuple
meta
directory
|
Directory containing MaltExtract text results files results/
|
|---|---|
results
directory
|
Directory containing MaltExtract text results files results/
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| maltextract | Java tool to work with ancient metagenomics | https://github.com/rhuebler/hops |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:29:21 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fmaltextract/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/maltextract/blobs/sha256:91b65ed770d47ba8dfa3c0abcb14108d7c248db296f9776df244b5148304382e |
| Size | 2.3 KB |
| Checksum | sha256:91b65ed770d47ba8dfa3c0abcb14108d7c248db296f9776df244b5148304382e |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:29:21 (UTC) | 3 | 2.3 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:20:53 (UTC) | 3 | 2.3 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:15:17 (UTC) | 4 | 2.3 KB |