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nf-core/somalier/ancestry @ 0.0.0-6c4ed3a

Somalier can extract informative sites, evaluate relatedness, and perform quality-control on BAM/CRAM/BCF/VCF/GVCF or from jointly-called VCFs

relatedness QC bam cram vcf gvcf ancestry identity kinship informative sites family
Latest version: 0.0.0-6c4ed3a
Total downloads: 9
Source: nf-core/modules
Authors: @atrigila
Maintainers: @atrigila

Summary

Somalier can extract informative sites, evaluate relatedness, and perform quality-control on BAM/CRAM/BCF/VCF/GVCF or from jointly-called VCFs

Get started

Add the following snippet to your workflow script to include this module.

include { SOMALIER_ANCESTRY } from 'nf-core/somalier/ancestry'

License

MIT License

Process
Name SOMALIER_ANCESTRY
Input 2 channels
#1 tuple
meta map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
query_somalier_files file

Set of somalier files for query samples. Obtained via somalier extract.

 *.{somalier}
#2 tuple
meta2 map

Groovy Map containing labelled samples information e.g. [ id:'test', single_end:false ]
labels_tsv file

TSV for labelled samples. e.g. Somalier labels for 1kg https://raw.githubusercontent.com/brentp/somalier/master/scripts/ancestry-labels-1kg.tsv

 *.{tsv}
labelled_somalier_files file

Set of somalier files for labelled samples. e.g. Somalier files for 1kg https://zenodo.org/record/3479773/files/1kg.somalier.tar.gz?download=1

 *.{somalier}
Output 3 channels
#1 tsv tuple
meta map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
*.somalier-ancestry.tsv file

TSV with ancestry information for query and labelled samples.

 *.somalier-ancestry.tsv
#2 html tuple
meta map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
*.somalier-ancestry.html file

html file with ancestry information for query and labelled samples.

 *.somalier-ancestry.html
#3 versions_somalier tuple
${task.process} string

The name of the process
somalier string

The name of the tool
somalier 2>&1 | sed -n 's/.*version: \([0-9.]*\).*/\1/p' eval

The expression to obtain the version of the tool
Tool Description Homepage
somalier Somalier can extract informative sites, evaluate relatedness, and perform quality-control on BAM/CRAM/BCF/VCF/GVCF or from jointly-called VCFs https://github.com/brentp/somalier
Version 0.0.0-6c4ed3a
Commit ID 6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date 23 Apr 2026 15:46:50 (UTC)
Download URL https://registry.nextflow.io/api/v1/modules/nf-core%2Fsomalier%2Fancestry/0.0.0-6c4ed3a/download
OCI Store URL https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/somalier/ancestry/blobs/sha256:2a40a431fbe7eb9a8587cec2fd2314cd9b7cf57892837d70407c7e9fd2fcc1c2
Size 3.2 KB
Checksum sha256:2a40a431fbe7eb9a8587cec2fd2314cd9b7cf57892837d70407c7e9fd2fcc1c2
Downloads 3
Version Date Status Downloads Size
0.0.0-6c4ed3a 23 Apr 2026 15:46:50 (UTC) 3 3.2 KB
0.0.0-3fc6d40 22 Apr 2026 15:32:19 (UTC) 3 3.2 KB
0.0.0-0c7146d 08 Apr 2026 19:39:40 (UTC) 3 3.2 KB