Nextflow Modules
Showing module(s) with keyword "3-letter genome"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/bam_methyldackel | Workflow | 3-letter genome methylation 5mC methylseq bisulphite bisulfite bam | Performs methylation quantification based on negative readout of C to T conversion of 3-letter genome alignments using Methyldackel. |
| nf-core/bismark/align | Process | bismark 3-letter genome map methylation 5mC methylseq bisulphite bisulfite bam | Performs alignment of BS-Seq reads using bismark |
| nf-core/bismark/deduplicate | Process | bismark 3-letter genome map methylation 5mC methylseq bisulphite bisulfite bam | Removes alignments to the same position in the genome from the Bismark mapping output. |
| nf-core/bismark/genomepreparation | Process | bismark 3-letter genome index methylation 5mC methylseq bisulphite bisulfite fasta | Converts a specified reference genome into two different bisulfite converted versions and indexes them for alignments. |
| nf-core/bwameth/align | Process | bwameth alignment 3-letter genome map methylation 5mC methylseq bisulphite bisulfite fastq bam | Performs alignment of BS-Seq reads using bwameth |
| nf-core/bwameth/index | Process | bwameth 3-letter genome index methylseq bisulphite bisulfite fasta | Performs indexing of c2t converted reference genome |
| nf-core/fastq_align_dedup_bismark | Workflow | bismark 3-letter genome map methylation 5mC methylseq bisulphite bisulfite bam | Align BS-Seq reads to a reference genome using bismark, deduplicate and sort |
| nf-core/fastq_align_dedup_bwameth | Workflow | bwameth alignment 3-letter genome map methylation 5mC methylseq bisulphite bisulfite fastq bam | Performs alignment of BS-Seq reads using bwameth or parabricks/fq2bammeth, sort and deduplicate |