Nextflow Modules
Showing module(s) with keyword "antimicrobial peptides"
| Module | Keywords | Description |
|---|---|---|
| nf-core/ampcombi | antimicrobial peptides amps parsing reporting align macrel amplify hmmsearch neubi ampir DRAMP | A tool to parse and summarise results from antimicrobial peptides tools and present functional classification. |
| nf-core/ampcombi2/cluster | antimicrobial peptides amps parsing reporting align clustering mmseqs2 | A submodule that clusters the merged AMP hits generated from ampcombi2/parsetables and ampcombi2/complete using MMseqs2 cluster. |
| nf-core/ampcombi2/complete | antimicrobial peptides amps parsing reporting align macrel amplify hmmsearch neubi ampir ampgram amptransformer DRAMP | A submodule that merges all output summary tables from ampcombi/parsetables in one summary file. |
| nf-core/ampcombi2/parsetables | antimicrobial peptides amps parsing reporting align macrel amplify hmmsearch neubi ampir ampgram amptransformer DRAMP MMseqs2 InterProScan | A submodule that parses and standardizes the results from various antimicrobial peptide identification tools. |
| nf-core/amplify/predict | antimicrobial peptides AMPs prediction model | AMPlify is an attentive deep learning model for antimicrobial peptide prediction. |
| nf-core/macrel/contigs | AMP antimicrobial peptides genome mining metagenomes peptide prediction | A tool that mines antimicrobial peptides (AMPs) from (meta)genomes by predicting peptides from genomes (provided as contigs) and outputs all the predicted anti-microbial peptides found. |