|
nf-core/ampcombi
|
antimicrobial peptides
amps
parsing
reporting
align
macrel
amplify
hmmsearch
neubi
ampir
DRAMP
|
A tool to parse and summarise results from antimicrobial peptides tools and present functional classification.
|
|
nf-core/ampcombi2/cluster
|
antimicrobial peptides
amps
parsing
reporting
align
clustering
mmseqs2
|
A submodule that clusters the merged AMP hits generated from ampcombi2/parsetables and ampcombi2/complete using MMseqs2 cluster.
|
|
nf-core/ampcombi2/complete
|
antimicrobial peptides
amps
parsing
reporting
align
macrel
amplify
hmmsearch
neubi
ampir
ampgram
amptransformer
DRAMP
|
A submodule that merges all output summary tables from ampcombi/parsetables in one summary file.
|
|
nf-core/ampcombi2/parsetables
|
antimicrobial peptides
amps
parsing
reporting
align
macrel
amplify
hmmsearch
neubi
ampir
ampgram
amptransformer
DRAMP
MMseqs2
InterProScan
|
A submodule that parses and standardizes the results from various antimicrobial peptide identification tools.
|
|
nf-core/amps
|
malt
MaltExtract
HOPS
amps
alignment
metagenomics
ancient DNA
aDNA
palaeogenomics
archaeogenomics
microbiome
authentication
damage
edit distance
post Post-processing
visualisation
|
Post-processing script of the MaltExtract component of the HOPS package
|