|
nf-core/abricate/run
|
bacteria
assembly
antimicrobial resistance
|
Screen assemblies for antimicrobial resistance against multiple databases
|
|
nf-core/argnorm
|
amr
antimicrobial resistance
arg
antimicrobial resistance genes
genomics
metagenomics
normalization
drug categorization
|
Normalize antibiotic resistance genes (ARGs) using the ARO ontology (developed by CARD).
|
|
nf-core/deeparg/predict
|
deeparg
antimicrobial resistance
antimicrobial resistance genes
arg
deep learning
prediction
contigs
metagenomes
|
A deep learning based approach to predict Antibiotic Resistance Genes (ARGs) from metagenomes
|
|
nf-core/hamronization/abricate
|
amr
antimicrobial resistance
reporting
abricate
|
Tool to convert and summarize ABRicate outputs using the hAMRonization specification
|
|
nf-core/hamronization/amrfinderplus
|
amr
antimicrobial resistance
arg
antimicrobial resistance genes
reporting
amrfinderplus
|
Tool to convert and summarize AMRfinderPlus outputs using the hAMRonization specification.
|
|
nf-core/hamronization/deeparg
|
amr
antimicrobial resistance
reporting
deeparg
|
Tool to convert and summarize DeepARG outputs using the hAMRonization specification
|
|
nf-core/hamronization/fargene
|
amr
antimicrobial resistance
arg
antimicrobial resistance genes
reporting
fARGene
|
Tool to convert and summarize fARGene outputs using the hAMRonization specification
|
|
nf-core/hamronization/rgi
|
amr
antimicrobial resistance
arg
antimicrobial resistance genes
reporting
rgi
|
Tool to convert and summarize RGI outputs using the hAMRonization specification.
|
|
nf-core/hamronization/summarize
|
amr
antimicrobial resistance
reporting
|
Tool to summarize and combine all hAMRonization reports into a single file
|
|
nf-core/mykrobe/predict
|
fastq
bam
antimicrobial resistance
|
AMR predictions for supported species
|