Nextflow Modules
Showing module(s) with keyword "microbial genomics"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/drep/compare | Process | drep genome fasta compare comparison visualisation metagenomics assembly microbial genomics dereplication | Performs rapid genome comparisons for a group of genomes and visualize their relatedness |
| nf-core/drep/dereplicate | Process | drep genome fasta compare comparison visualisation metagenomics assembly microbial genomics dereplication | Dereplicates a genome set by identifying highly similar genomes and choose the best representative genome |
| nf-core/parsnp | Process | alignment bacteria phylogeny microbial genomics core genome SNP | Parsnp is a command-line-tool for efficient microbial core genome alignment and SNP detection. |
| nf-core/skesa | Process | assembly de-novo assembly microbial genomics fasta fastq | Assemble microbial genomes from short-read FASTQ files into contigs in FASTA format using SKESA. |