Nextflow Modules
Showing module(s) with keyword "microbial genomics"
| Module | Keywords | Description |
|---|---|---|
| nf-core/drep/compare | drep genome fasta compare comparison visualisation metagenomics assembly microbial genomics dereplication | Performs rapid genome comparisons for a group of genomes and visualize their relatedness |
| nf-core/drep/dereplicate | drep genome fasta compare comparison visualisation metagenomics assembly microbial genomics dereplication | Dereplicates a genome set by identifying highly similar genomes and choose the best representative genome |
| nf-core/skesa | assembly de-novo assembly microbial genomics fasta fastq | Assemble microbial genomes from short-read FASTQ files into contigs in FASTA format using SKESA. |