Nextflow Modules
Showing module(s) with keyword "multiple sequence alignment"
| Module | Keywords | Description |
|---|---|---|
| nf-core/clonalframeml | fasta multiple sequence alignment recombination | Predict recomination events in bacterial genomes |
| nf-core/emboss/cons | emboss consensus fasta multiple sequence alignment MSA | cons calculates a consensus sequence from a multiple sequence alignment. To obtain the consensus, the sequence weights and a scoring matrix are used to calculate a score for each amino acid residue or nucleotide at each position in the alignment. |
| nf-core/macse/refinealignment | multiple sequence alignment codon-aware fasta | improves the input nucleotide alignment in a codon-aware manner |
| nf-core/mafft/align | fasta msa multiple sequence alignment | Multiple sequence alignment using MAFFT |
| nf-core/muscle | msa multiple sequence alignment phylogeny | MUSCLE is a program for creating multiple alignments of amino acid or nucleotide sequences. A range of options are provided that give you the choice of optimizing accuracy, speed, or some compromise between the two |
| nf-core/muscle5/super5 | align msa multiple sequence alignment | Muscle is a program for creating multiple alignments of amino acid or nucleotide sequences. This particular module uses the super5 algorithm for very big alignments. It can permutate the guide tree according to a set of flags. |