Nextflow Modules
Showing module(s) with keyword "pseudoalignment"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/custom/tx2gene | Process | gene gtf pseudoalignment rsem transcript | Make a transcript/gene mapping from a GTF and cross-reference with transcript quantifications. |
| nf-core/kallisto/quant | Process | quant kallisto pseudoalignment | Computes equivalence classes for reads and quantifies abundances |
| nf-core/tximeta/tximport | Process | gene kallisto pseudoalignment rsem salmon transcript | Import transcript-level abundances and estimated counts for gene-level analysis packages |