Nextflow Modules
Showing module(s) with keyword "atac-seq"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/chromap/chromap | Process | chromap alignment map fastq bam sam hi-c atac-seq chip-seq trimming duplicate removal | Performs preprocessing and alignment of chromatin fastq files to fasta reference files using chromap. |
| nf-core/fastq_align_chromap | Workflow | align fasta genome reference chromatin profiles chip-seq atac-seq hic | Align high throughput chromatin profiles using Chromap, updating readgroups if neccessary and then sort with samtools |
| nf-core/macs2/callpeak | Process | alignment atac-seq chip-seq peak-calling | Peak calling of enriched genomic regions of ChIP-seq and ATAC-seq experiments |
| nf-core/macs3/callpeak | Process | alignment atac-seq chip-seq peak-calling | Peak calling of enriched genomic regions of ChIP-seq and ATAC-seq experiments |
| nf-core/nucleoatac/run | Process | atac-seq nucleosome occupancy positioning | Call nucleosome positions and occupancy from paired-end ATAC-seq data |