Nextflow Modules
Showing module(s) with keyword "chip-seq"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/chromap/chromap | Process | chromap alignment map fastq bam sam hi-c atac-seq chip-seq trimming duplicate removal | Performs preprocessing and alignment of chromatin fastq files to fasta reference files using chromap. |
| nf-core/epic2/epic2 | Process | alignment chip-seq cut&run cut&tag domain-calling | Domain calling of broad enriched genomic regions of ChIP-seq, Cut&Run or Cut&Tag |
| nf-core/fastq_align_chromap | Workflow | align fasta genome reference chromatin profiles chip-seq atac-seq hic | Align high throughput chromatin profiles using Chromap, updating readgroups if neccessary and then sort with samtools |
| nf-core/macs2/callpeak | Process | alignment atac-seq chip-seq peak-calling | Peak calling of enriched genomic regions of ChIP-seq and ATAC-seq experiments |
| nf-core/macs3/callpeak | Process | alignment atac-seq chip-seq peak-calling | Peak calling of enriched genomic regions of ChIP-seq and ATAC-seq experiments |