Nextflow Modules
Showing module(s) with keyword "bwamem"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/fasta_index_dna | Workflow | fasta index bowtie2 bwamem bwamem2 bwamem3 dragmap snapaligner | Generate aligner index for a reference genome. Please note, this workflow requires input CHANNELS. Input values will cause errors |
| nf-core/fasta_index_methylseq | Workflow | bismark bwameth bwamem prepare genome index | Generate index files from reference fasta for bismark, bwameth and bwamem aligners |
| nf-core/fastq_align_dedup_bwamem | Workflow | bwamem alignment map 5mC methylseq DNA fastq bam | Performs alignment of DNA or TAPS-treated reads using bwamem or parabricks/fq2bam, sort and deduplicate |
| nf-core/fastq_align_dna | Workflow | fastq bam sort bwamem bwamem2 bwamem3 dragmap snapaligner strobealign | Align fastq files to a reference genome |