Nextflow Modules
Showing module(s) with keyword "gene expression"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/cellranger/multi | Process | align reference cellranger multiomics gene expression vdj antigen capture antibody capture crispr | Module to use Cell Ranger's pipelines to analyze sequencing data produced from various Chromium technologies, including Single Cell Gene Expression, Single Cell Immune Profiling, Feature Barcoding, and Cell Multiplexing. |
| nf-core/custom/rsemmergecounts | Process | rsem merge counts gene expression | Merge per-sample RSEM results into wide and long format TSV matrices |
| nf-core/simpleaf/index | Process | indexing transcriptome gene expression SimpleAF | Indexing of transcriptome for gene expression quantification using SimpleAF |
| nf-core/simpleaf/quant | Process | quantification gene expression SimpleAF | simpleaf is a program to simplify and customize the running and configuration of single-cell processing with alevin-fry. |