Nextflow Modules
Showing module(s) with keyword "hidden markov model"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/hmmer/hmmemit | Process | hidden markov model HMM hmmer sequence emission simulation profile | emit sequences from a profile HMM |
| nf-core/hmmer/hmmlogo | Process | hidden markov model HMM hmmer logo profile sequence logo | extract logo data from a profile HMM file to produce an HMM logo |
| nf-core/hmmer/hmmstat | Process | hidden markov model HMM hmmer statistics profile summary | display summary statistics for each profile HMM in an HMM database file |
| nf-core/mgnifam/generatefamilies | Process | protein families hidden markov model profile hmm clustering sequence alignment metagenomics hmmer protein sequences | Iteratively builds protein family HMM profiles from MMseqs2 sequence clusters and expands them against a protein database |
| nf-core/mgnifam/updatefamilies | Process | protein families family update database update hidden markov model profile hmm sequence alignment metagenomics hmmer protein sequences | Refreshes existing protein family HMM profiles against a new sequence database, keeping each family's name stable across releases |