Nextflow Modules
Showing module(s) with keyword "phylogenetic placement"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/epang/place | Process | phylogeny phylogenetic placement sequences | phylogenetic placement of query sequences in a reference tree |
| nf-core/epang/split | Process | phylogeny phylogenetic placement sequences | splits an alignment into reference and query parts |
| nf-core/fasta_newick_epang_gappa | Workflow | phylogenetic placement phylogenetics alignment fasta newick | Run phylogenetic placement with a number of query sequences plus a reference alignment and phylogeny. Used in nf-core/phyloplace. |
| nf-core/gappa/editmerge | Process | merge jplace phylogenetic placement | Merges the pqueries of several jplace files, placed on a common reference tree, into a single jplace file |
| nf-core/gappa/examineassign | Process | phylogeny phylogenetic placement classification taxonomy | assigns taxonomy to query sequences in phylogenetic placement output |
| nf-core/gappa/examineheattree | Process | phylogeny phylogenetic placement heattree visualisation | colours a phylogeny with placement densities |