Nextflow Modules
Showing module(s) with keyword "variation graph"
| Module | Keywords | Description |
|---|---|---|
| nf-core/gfaffix | gfa graph pangenome variation graph | Collapse walk-preserving shared affixes in variation graphs in GFA format |
| nf-core/odgi/build | variation graph pangenome graph gfa graph construction | Construct a dynamic succinct variation graph in ODGI format from a GFAv1. |
| nf-core/odgi/draw | variation graph pangenome graph gfa graph drawing | Draw previously-determined 2D layouts of the graph with diverse annotations. |
| nf-core/odgi/layout | variation graph pangenome graph gfa graph layout | Establish 2D layouts of the graph using path-guided stochastic gradient descent. The graph must be sorted and id-compacted. |
| nf-core/odgi/sort | variation graph pangenome graph gfa graph layout | Apply different kind of sorting algorithms to a graph. The most prominent one is the PG-SGD sorting algorithm. |
| nf-core/odgi/stats | variation graph pangenome graph gfa graph stats | Metrics describing a variation graph and its path relationship. |
| nf-core/odgi/unchop | variation graph pangenome graph gfa graph unchopping | Merge unitigs into a single node preserving the node order. |
| nf-core/odgi/view | variation graph pangenome graph gfa graph formats | Project a graph into other formats. |
| nf-core/odgi/viz | variation graph pangenome graph gfa graph viz | Visualize a variation graph in 1D. |
| nf-core/seqwish/induce | induce paf gfa graph variation graph | Induce a variation graph in GFA format from alignments in PAF format |
| nf-core/smoothxg | gfa graph pangenome variation graph POA | Linearize and simplify variation graph in GFA format using blocked partial order alignment |
| nf-core/vg/deconstruct | vcf gfa graph pangenome graph variation graph graph projection to vcf | Deconstruct snarls present in a variation graph in GFA format to variants in VCF format |