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Nextflow Pipelines

Nextflow pipelines hosted in Git repositories. Each published release records the Git revision it runs and the launch configuration it ships with.

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7 pipeline(s) matching "arg".

Pipeline Keywords Description
nf-core/circrna
0.0.0-23fdf1d
circrna circrna-pipeline circrna-prediction circular-rna +5 circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data
nf-core/deepmodeloptim
0.0.0-9925283
artificial-intelligence dataprocessing deeplearning genomics +3 Stochastic Testing and Input Manipulation for Unbiased Learning Systems
nf-core/diseasemodulediscovery
0.0.0-a20b5b0
active-modules complex-diseases disease-mechanisms disease-modules +9 A pipeline for network-based disease module identification.
nf-core/funcscan
4.0.0
amp amr antibiotic-resistance antimicrobial-peptides +11 (Meta-)genome screening for functional and natural product gene sequences
nf-core/oncoanalyser
3.0.0
cancer clinical ctdna dna +9 A comprehensive cancer DNA/RNA analysis and reporting pipeline
nf-core/pacvar
1.1.0
alignment long-read pacbio puretarget +2 Longread PacBio sequencing processing for WGS and PureTarget
nf-core/sarek
3.10.0
annotation cancer gatk4 genomics +7 Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing