Nextflow Registry | nf-core/dastool/fastatocontig2bin@0.0.0-0c7146d

nf-core/dastool/fastatocontig2bin @ 0.0.0-0c7146d

Helper script to convert a set of bins in fasta format to tabular scaffolds2bin format

binning das tool table de novo bins contigs assembly das_tool

Latest version: 0.0.0-6c4ed3a

Total downloads: 10

Source: nf-core/modules

Authors: @maxibor @jfy133

Maintainers: @maxibor @jfy133

Helper script to convert a set of bins in fasta format to tabular scaffolds2bin format

Add the following snippet to your workflow script to include this module.

include { DASTOOL_FASTATOCONTIG2BIN } from 'nf-core/dastool/fastatocontig2bin'

MIT License

Process

`Name`	`DASTOOL_FASTATOCONTIG2BIN`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`fasta` file	Fasta of list of fasta files recommended to be gathered via with .collect() of bins `*.{fa,fa.gz,fas,fas.gz,fna,fna.gz,fasta,fasta.gz}`

`extension` string	Fasta file extension (fa \| fas \| fasta \| ...), without .gz suffix, if gzipped input.

Output 2 channels

#1 versions_dastool tuple

`${task.process}` string	The process the versions were collected from
`dastool` string	The tool name
`DAS_Tool --version 2>&1 \| grep "DAS Tool" \| sed "s/DAS Tool //"` eval	The expression to obtain the version of the tool

#2 fastatocontig2bin tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.tsv` file	tabular contig2bin file for DAS tool input `*.tsv`

Tool	Description	Homepage
dastool	DAS Tool is an automated method that integrates the results of a flexible number of binning algorithms to calculate an optimized, non-redundant set of bins from a single assembly.	https://github.com/cmks/DAS_Tool

Version	0.0.0-0c7146d
Commit ID	6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date	08 Apr 2026 18:55:40 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Fdastool%2Ffastatocontig2bin/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/dastool/fastatocontig2bin/blobs/sha256:daaa7a8f9c297ec3838a0634ca869c6068da84cdc77693b83961f1375b6ea295
Size	2.8 KB
Checksum	sha256:daaa7a8f9c297ec3838a0634ca869c6068da84cdc77693b83961f1375b6ea295
Downloads	3

Version	Date	Downloads	Size
0.0.0-6c4ed3a	23 Apr 2026 15:12:28 (UTC)	4	2.8 KB
0.0.0-3fc6d40	22 Apr 2026 15:08:47 (UTC)	3	2.8 KB
0.0.0-0c7146d	08 Apr 2026 18:55:40 (UTC)	3	2.8 KB