Nextflow Modules
Showing module(s) with keyword "ancient dna"
| Module | Keywords | Description |
|---|---|---|
| nf-core/mapad/map | mapad ancient dna adna damage deamination miscoding lesions c to t palaeogenomics archaeogenomics palaeogenetics archaeogenetics short-read align aligner alignment map mapper mapping reference fasta fastq bam cram | Map short-reads to an indexed reference genome |
| nf-core/sexdeterrmine | sex determination genetic sex relative coverage ancient dna | Calculate the relative coverage on the Gonosomes vs Autosomes from the output of samtools depth, with error bars. |