nf-core/amps @ 0.0.0-0c7146d
Summary
Post-processing script of the MaltExtract component of the HOPS package
Get started
Add the following snippet to your workflow script to include this module.
include { AMPS } from 'nf-core/amps'
License
MIT License
Process
Name
|
AMPS |
|---|
Input
3 channels
maltextract_results
directory
|
MaltExtract output directory results/
|
|---|
taxon_list
file
|
List of target taxa to evaluate used in MaltExtract *.txt
|
|---|
filter
string
|
The filter mode used in MaltExtract def_anc|default|scan|ancient|crawl
|
|---|
Output
5 channels
#1
tsv
results/heatmap_overview_Wevid.tsv
file
|
Candidate summary heatmap in TSV format heatmap_overview_Wevid.tsv
|
|---|
#2
json
results/heatmap_overview_Wevid.json
file
|
Candidate summary heatmap in MultiQC compatible JSON format heatmap_overview_Wevid.json
|
|---|
#3
summary_pdf
results/heatmap_overview_Wevid.pdf
file
|
Candidate summary heatmap in PDF format heatmap_overview_Wevid.pdf
|
|---|
#4
versions_hops
tuple
${task.process}
string
|
The name of the process |
|---|---|
hops
string
|
The name of the tool |
hops --version 2>&1 | sed 's/HOPS version//'
eval
|
The expression to obtain the version of the tool |
#5
candidate_pdfs
results/pdf_candidate_profiles/
directory
|
Directory of per sample output PDFs organised by reference pdf_candidate_profiles/
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| amps | Post-processing script of the MaltExtract tool for ancient metagenomics | https://github.com/rhuebler/HOPS |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 18:42:15 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Famps/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/amps/blobs/sha256:42081ab3b4eaa1bf4c72d8df6c3c35848b12eddbbd6a890093a7a8b4a86d2cdb |
| Size | 3.3 KB |
| Checksum | sha256:42081ab3b4eaa1bf4c72d8df6c3c35848b12eddbbd6a890093a7a8b4a86d2cdb |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:02:07 (UTC) | 4 | 3.3 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:01:39 (UTC) | 4 | 3.3 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:42:15 (UTC) | 3 | 3.3 KB |