Nextflow Modules
Showing module(s) with keyword "protein sequence"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/mmseqs/cluster | Process | protein sequence databases clustering searching indexing mmseqs2 | Cluster sequences using MMSeqs2 cluster. |
| nf-core/mmseqs/createdb | Process | protein sequence databases clustering searching indexing mmseqs2 | Create an MMseqs database from an existing FASTA/Q file |
| nf-core/mmseqs/createindex | Process | protein sequence databases clustering searching indexing | Creates sequence index for mmseqs database |
| nf-core/mmseqs/createtaxdb | Process | protein sequence databases clustering searching taxonomy | Adds taxonomy information to an existing MMseqs2 database |
| nf-core/mmseqs/createtsv | Process | protein sequence databases clustering searching indexing mmseqs2 tsv | Create a tsv file from a query and a target database as well as the result database |
| nf-core/mmseqs/easycluster | Process | protein sequence databases clustering searching mmseqs2 | Cluster sequences using MMSeqs2 easy cluster. |
| nf-core/mmseqs/easysearch | Process | protein sequence databases searching mmseqs2 | Searches for the sequences of a fasta file in a database using MMseqs2 |
| nf-core/mmseqs/linclust | Process | protein sequence databases clustering searching indexing mmseqs2 | Cluster sequences in linear time using MMSeqs2 linclust. |
| nf-core/mmseqs/makepaddedseqdb | Process | protein sequence databases clustering searching indexing mmseqs2 | Create an MMseqs padded database from an existing MMseqs database |
| nf-core/mmseqs/search | Process | protein sequence databases clustering searching indexing mmseqs2 | Search and calculate a score for similar sequences in a query and a target database. |
| nf-core/mmseqs/taxonomy | Process | protein sequence nucleotide sequence databases taxonomy homologs mmseqs2 | Computes the lowest common ancestor by identifying the query sequence homologs against the target database. |
| nf-core/mmseqs/tsv2exprofiledb | Process | protein sequence databases clustering searching indexing | Conversion of expandable profile to databases to the MMseqs2 databases format |