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nf-core/mmseqs/cluster
|
protein sequence
databases
clustering
searching
indexing
mmseqs2
|
Cluster sequences using MMSeqs2 cluster.
|
|
nf-core/mmseqs/createdb
|
protein sequence
databases
clustering
searching
indexing
mmseqs2
|
Create an MMseqs database from an existing FASTA/Q file
|
|
nf-core/mmseqs/createindex
|
protein sequence
databases
clustering
searching
indexing
|
Creates sequence index for mmseqs database
|
|
nf-core/mmseqs/createtaxdb
|
protein sequence
databases
clustering
searching
taxonomy
|
Adds taxonomy information to an existing MMseqs2 database
|
|
nf-core/mmseqs/createtsv
|
protein sequence
databases
clustering
searching
indexing
mmseqs2
tsv
|
Create a tsv file from a query and a target database as well as the result database
|
|
nf-core/mmseqs/easycluster
|
protein sequence
databases
clustering
searching
mmseqs2
|
Cluster sequences using MMSeqs2 easy cluster.
|
|
nf-core/mmseqs/easysearch
|
protein sequence
databases
searching
mmseqs2
|
Searches for the sequences of a fasta file in a database using MMseqs2
|
|
nf-core/mmseqs/linclust
|
protein sequence
databases
clustering
searching
indexing
mmseqs2
|
Cluster sequences in linear time using MMSeqs2 linclust.
|
|
nf-core/mmseqs/makepaddedseqdb
|
protein sequence
databases
clustering
searching
indexing
mmseqs2
|
Create an MMseqs padded database from an existing MMseqs database
|
|
nf-core/mmseqs/search
|
protein sequence
databases
clustering
searching
indexing
mmseqs2
|
Search and calculate a score for similar sequences in a query and a target database.
|
|
nf-core/mmseqs/taxonomy
|
protein sequence
nucleotide sequence
databases
taxonomy
homologs
mmseqs2
|
Computes the lowest common ancestor by identifying the query sequence homologs against the target database.
|
|
nf-core/mmseqs/tsv2exprofiledb
|
protein sequence
databases
clustering
searching
indexing
|
Conversion of expandable profile to databases to the MMseqs2 databases format
|