Nextflow Modules
Showing module(s) with keyword "taxonomic classification"
| Module | Keywords | Description |
|---|---|---|
| nf-core/catpack/addnames | taxonomic classification classification long reads mags assembly | Taxonomic classification of long DNA sequences and metagenome assembled genomes (e.g. MAGs / bins). |
| nf-core/catpack/bins | taxonomic classification classification long reads mags assembly | Taxonomic classification of long DNA sequences and metagenome assembled genomes (e.g. MAGs / bins). |
| nf-core/catpack/contigs | taxonomic classification classification long reads mags assembly | Taxonomic classification of long DNA sequences and metagenome assembled genomes (e.g. contigs, MAGs / bins). |
| nf-core/catpack/download | taxonomic classification classification database download | Downloads the required files for either Nr or GTDB for building into a CAT database |
| nf-core/catpack/reads | taxonomic classification classification long reads mags assembly abundance taxonomic composition | Taxonomic classification plus read-based abundance estimation from long DNA sequences and metagenome assembled genomes (e.g. contigs, MAGs / bins). |
| nf-core/catpack/summarise | taxonomic classification classification long reads mags assembly | Summarises results from CAT/BAT/RAT classification steps |
| nf-core/gtdbtk/classifywf | GTDB taxonomy taxonomic classification metagenomics classification genome taxonomy database bacteria archaea | GTDB-Tk is a software toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes based on the Genome Database Taxonomy GTDB. |
| nf-core/gtdbtk/gtdbtoncbimajorityvote | gtdb taxonomy ncbi taxonomy taxonomic classification conversion taxonomy classification genome taxonomy database bacteria archaea | Converts the output classifications of GTDB-TK from GTDB taxonomy to NCBI taxonomy |
| nf-core/metabuli/build | database taxonomic classification classification metagenomics | Builds a database for classification with metabuli from FASTA files and a taxonomy |
| nf-core/sourmash/gather | FracMinHash sketch signature kmer containment sourmash genomics metagenomics taxonomic classification taxonomic profiling | Search a metagenome sourmash signature against one or many reference databases and return the minimum set of genomes that contain the k-mers in the metagenome. |
| nf-core/sourmash/sketch | hash sketch sourmash genomics metagenomics taxonomic classification taxonomic profiling kmer | Create a signature (a group of FracMinHash sketches) of a sequence using sourmash |
| nf-core/sourmash/taxannotate | fracminhash sketch signature kmer containment sourmash genomics metagenomics taxonomic classification taxonomic profiling | Annotate list of metagenome members (based on sourmash signature matches) with taxonomic information. |