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Showing module(s) with keyword "taxonomic profiling"

Module Keywords Description
nf-core/kaiju/kaiju classify metagenomics fastq taxonomic profiling Taxonomic classification of metagenomic sequence data using a protein reference database
nf-core/kaiju/kaiju2table classify metagenomics taxonomic profiling write your description here
nf-core/kaiju/mergeoutputs classify metagenomics fastq taxonomic profiling Merge two tab-separated output files of Kaiju and Kraken in the column format
nf-core/kaiju/mkfmi classify metagenomics fastq taxonomic profiling database index Make Kaiju FMI-index file from a protein FASTA file
nf-core/kmcp/compute metagenomics classify taxonomic profiling fastq sequences kmers Generate k-mers (sketches) from FASTA/Q sequences
nf-core/kmcp/index metagenomics classify taxonomic profiling fastq sequences kmers index Construct KMCP database from k-mer files
nf-core/kmcp/merge metagenomics classify taxonomic profiling fastq sequences kmers Merge search results from multiple databases.
nf-core/kmcp/profile metagenomics classify taxonomic profiling fastq sequences kmers index Generate taxonomic profile from search results
nf-core/kmcp/search metagenomics classify taxonomic profiling fastq sequences kmers Search sequences against database
nf-core/motus/downloaddb classify metagenomics fastq taxonomic profiling database download Download the mOTUs database
nf-core/motus/merge classify metagenomics fastq taxonomic profiling merging merge otu table Taxonomic meta-omics profiling using universal marker genes
nf-core/motus/preplong classify metagenomics fastq taxonomic profiling Taxonomic meta-omics profiling using universal marker genes
nf-core/motus/profile classify metagenomics fastq taxonomic profiling Taxonomic meta-omics profiling using universal marker genes
nf-core/sourmash/gather FracMinHash sketch signature kmer containment sourmash genomics metagenomics taxonomic classification taxonomic profiling Search a metagenome sourmash signature against one or many reference databases and return the minimum set of genomes that contain the k-mers in the metagenome.
nf-core/sourmash/sketch hash sketch sourmash genomics metagenomics taxonomic classification taxonomic profiling kmer Create a signature (a group of FracMinHash sketches) of a sequence using sourmash
nf-core/sourmash/taxannotate fracminhash sketch signature kmer containment sourmash genomics metagenomics taxonomic classification taxonomic profiling Annotate list of metage