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nf-core/kaiju/kaiju
|
Process
|
classify
metagenomics
fastq
taxonomic profiling
|
Taxonomic classification of metagenomic sequence data using a protein reference database
|
|
nf-core/kaiju/kaiju2table
|
Process
|
classify
metagenomics
taxonomic profiling
|
write your description here
|
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nf-core/kaiju/mergeoutputs
|
Process
|
classify
metagenomics
fastq
taxonomic profiling
|
Merge two tab-separated output files of Kaiju and Kraken in the column format
|
|
nf-core/kaiju/mkfmi
|
Process
|
classify
metagenomics
fastq
taxonomic profiling
database
index
|
Make Kaiju FMI-index file from a protein FASTA file
|
|
nf-core/kmcp/compute
|
Process
|
metagenomics
classify
taxonomic profiling
fastq
sequences
kmers
|
Generate k-mers (sketches) from FASTA/Q sequences
|
|
nf-core/kmcp/index
|
Process
|
metagenomics
classify
taxonomic profiling
fastq
sequences
kmers
index
|
Construct KMCP database from k-mer files
|
|
nf-core/kmcp/merge
|
Process
|
metagenomics
classify
taxonomic profiling
fastq
sequences
kmers
|
Merge search results from multiple databases.
|
|
nf-core/kmcp/profile
|
Process
|
metagenomics
classify
taxonomic profiling
fastq
sequences
kmers
index
|
Generate taxonomic profile from search results
|
|
nf-core/kmcp/search
|
Process
|
metagenomics
classify
taxonomic profiling
fastq
sequences
kmers
|
Search sequences against database
|
|
nf-core/motus/downloaddb
|
Process
|
classify
metagenomics
fastq
taxonomic profiling
database
download
|
Download the mOTUs database
|
|
nf-core/motus/merge
|
Process
|
classify
metagenomics
fastq
taxonomic profiling
merging
merge
otu table
|
Taxonomic meta-omics profiling using universal marker genes
|
|
nf-core/motus/preplong
|
Process
|
classify
metagenomics
fastq
taxonomic profiling
|
Taxonomic meta-omics profiling using universal marker genes
|
|
nf-core/motus/profile
|
Process
|
classify
metagenomics
fastq
taxonomic profiling
|
Taxonomic meta-omics profiling using universal marker genes
|
|
nf-core/sourmash/gather
|
Process
|
FracMinHash sketch
signature
kmer
containment
sourmash
genomics
metagenomics
taxonomic classification
taxonomic profiling
|
Search a metagenome sourmash signature against one or many reference databases and return the minimum set of genomes that contain the k-mers in the metagenome.
|
|
nf-core/sourmash/sketch
|
Process
|
hash sketch
sourmash
genomics
metagenomics
taxonomic classification
taxonomic profiling
kmer
|
Create a signature (a group of FracMinHash sketches) of a sequence using sourmash
|
|
nf-core/sourmash/taxannotate
|
Process
|
|