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nf-core/crisprvar
0.0.0-7d00851
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n/a
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[WIP] Evaluate outcomes from genome editing experiments
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nf-core/cutandrun
3.2.2
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cutandrun cutandrun-seq cutandtag cutandtag-seq
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Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream analysis.
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nf-core/daamicrobiome
0.0.0-f730978
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differential-abundance micobiome
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Microbiome differential abundance consensus pipeline
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nf-core/dartseq
0.0.0-da3db96
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dartseq rna-editing rnaseq
|
Pipeline for m6A detection in RNAseq data
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nf-core/datasync
1.0.2
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n/a
|
nf-core/datasync is a system operation pipeline that provides several workflows for handling system operation / automation tasks
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nf-core/ddamsproteomics
0.0.0-e1f270b
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proteomics shotgun-ms
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Quantitative shotgun MS proteomics
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nf-core/deepmodeloptim
0.0.0-9925283
|
artificial-intelligence dataprocessing deeplearning genomics
+3
|
Stochastic Testing and Input Manipulation for Unbiased Learning Systems
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nf-core/deepmutscan
0.0.0-56e2861
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community-workflow deep-mutational-scanning genotype-phenotype shotgun-sequencing
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nf-core/deepmutscan is a reproducible, scalable, and community-curated pipeline for analyzing deep mutational scanning (DMS) data using shotgun DNA sequencing.
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nf-core/deepvariant
1.0.0
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deep-variant dna google variant-calling
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Please consider using/contributing to https://github.com/nf-core/sarek
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nf-core/demo
1.2.0
|
demo minimal-example training tutorial
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nf-core/demo is a simple nf-core style bioinformatics pipeline for workshops and demos.
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nf-core/demultiplex
1.8.0
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bases2fastq bcl2fastq demultiplexing elementbiosciences
+1
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Demultiplexing pipeline for sequencing data
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nf-core/denovohybrid
0.0.0-9299621
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assembly denovo denovo-assembly genome-assembly
+4
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UNDER CONSTRUCTION: Hybrid genome assembly pipeline using a combination of long and short sequencing reads
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nf-core/denovotranscript
1.2.1
|
denovo-assembly rna-seq transcriptome
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A pipeline for de novo transcriptome assembly of paired-end short reads from bulk RNA-seq
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nf-core/detaxizer
1.3.0
|
de-identification decontamination edna fastq
+10
|
A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Removal is optional.
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nf-core/diaproteomics
1.2.4
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data-independent-proteomics dia-proteomics openms proteomics
|
Automated quantitative analysis of DIA proteomics mass spectrometry measurements.
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nf-core/differentialabundance
2.0.0
|
atac-seq chip-seq deseq2 differential-abundance
+6
|
Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
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|
nf-core/diseasemodulediscovery
0.0.0-a20b5b0
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active-modules complex-diseases disease-mechanisms disease-modules
+9
|
A pipeline for network-based disease module identification.
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nf-core/drop
1.0.0
|
n/a
|
Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders
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nf-core/drugresponseeval
1.3.0
|
cell-lines cross-validation deep-learning drug-response
+9
|
Pipeline for testing drug response prediction models in a statistically and biologically sound way.
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nf-core/dualrnaseq
1.0.0
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dualrna-seq host-pathogen quantification readmapping
+1
|
Analysis of Dual RNA-seq data - an experimental method for interrogating host-pathogen interactions through simultaneous RNA-seq.
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