Nextflow Registry | Nextflow Pipelines

Nextflow Pipelines

Nextflow pipelines hosted in Git repositories. Each published release records the Git revision it runs and the launch configuration it ships with.

26 pipeline(s) matching "rna".

Pipeline	Keywords	Description
nf-core/rnavar 1.3.0	gatk4 rna rnaseq variant-calling +1	gatk4 RNA variant calling pipeline
nf-core/scflow 0.0.0-c2c9728	rnaseq single-cell single-nuclei single-nuclei-rna-sequencing	Please consider using/contributing to https://github.com/nf-core/scdownstream
nf-core/scnanoseq 1.3.0	10xgenomics long-read-sequencing nanopore rna-seq +3	Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
nf-core/scrnaseq 4.2.0	10x-genomics 10xgenomics alevin bustools +5	Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-droplet detection
nf-core/smrnaseq 2.4.1	small-rna smrna-seq	A small-RNA sequencing analysis pipeline
nf-core/spatialvi 0.0.0-17d6cb0	10x-genomics 10xgenomics image-processing microscopy +7	Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.