Nextflow Modules
Showing module(s) with keyword "de novo"
| Module | Keywords | Description |
|---|---|---|
| nf-core/dastool/dastool | binning das tool table de novo bins contigs assembly das_tool | DAS Tool binning step. |
| nf-core/dastool/fastatocontig2bin | binning das tool table de novo bins contigs assembly das_tool | Helper script to convert a set of bins in fasta format to tabular scaffolds2bin format |
| nf-core/dastool/scaffolds2bin | binning das tool table de novo bins contigs assembly das_tool | Helper script to convert a set of bins in fasta format to tabular scaffolds2bin format |
| nf-core/flye | assembly genome de novo genome assembler single molecule | De novo assembler for single molecule sequencing reads |
| nf-core/raven | de novo assembly genome genome assembler long uncorrected reads | De novo genome assembler for long uncorrected reads. |
| nf-core/rnaquast | rna assembly rnaseq de novo quality control | Assess the quality of an RNAseq assembly with or without a reference genome |
| nf-core/transrate | transcriptome assembly quality control qc de novo | Reference-free and reference-based quality assessment of de novo transcriptome assemblies. Only sequence-based (--assembly) and reference-based (--reference) metrics are supported. Read-based metrics (--left/--right) are not: they hard-require the `bam-read` binary, which isn't published on any conda channel, and their aligner (snap-aligner, pinned to an old dev build) segfaults building an index for at least small test genomes. |