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nf-core/mhcquant
3.3.0
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dda immunopeptidomics mass-spectrometry mhc
+2
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Identify and quantify MHC eluted peptides from mass spectrometry raw data
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nf-core/mitodetect
0.0.0-d5e687d
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n/a
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A-Z analysis of mitochondrial NGS data
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nf-core/mnaseseq
1.0.0
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mnase-seq nucleosome nucleosome-maps nucleosome-positioning
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MNase-seq analysis pipeline using BWA and DANPOS2.
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nf-core/moleculardynamics
0.0.0-c94861c
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n/a
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n/a
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nf-core/molkart
1.2.0
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fish image-processing imaging molecularcartography
+4
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A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)
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nf-core/mspepid
0.0.0-980218a
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mass-spectrometry proteomics
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This pipeline performs the peptide identification of MS2 spectra from a proteomics experiment. For this, different search algorithm and rescoring approaches can be selected.
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nf-core/multiplesequencealign
1.1.1
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n/a
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A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.
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nf-core/nanoseq
3.1.0
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alignment demultiplexing nanopore qc
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Nanopore demultiplexing, QC and alignment pipeline
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nf-core/nanostring
1.3.3
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nanostring nanostringnorm
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An analysis pipeline for Nanostring nCounter expression data.
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nf-core/nascent
2.3.0
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gro-seq nascent pro-seq rna
+2
|
Nascent Transcription Processing Pipeline
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nf-core/ncrnannotator
0.0.0-b3e953b
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infernal ncrna rfam
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nf-core pipeline for genome-level ncRNA annotation using Infernal
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nf-core/neutronstar
1.0.0
|
10x-genomics 10xgenomics denovo-assembly genome-assembly
+2
|
De novo assembly pipeline for 10X linked-reads using Supernova
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nf-core/omicsgenetraitassociation
0.0.0-f6702ce
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n/a
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A nextflow pipeline which integrates multiple omic data streams and performs coordinated analysis
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nf-core/oncoanalyser
3.0.0
|
cancer clinical ctdna dna
+9
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A comprehensive cancer DNA/RNA analysis and reporting pipeline
|
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nf-core/pacsomatic
0.0.0-1dbb0cf
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n/a
|
Nextflow pipeline for PacBio HiFi tumor/normal somatic genomics
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nf-core/pacvar
1.1.0
|
alignment long-read pacbio puretarget
+2
|
Longread PacBio sequencing processing for WGS and PureTarget
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nf-core/pairgenomealign
3.0.4
|
comparative-genomics dot-plot genomics last
+3
|
Pairwise genome comparison pipeline using the LAST software to align a list of query genomes to a target genome, and plot the results
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nf-core/pangenome
1.1.3
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pangenome
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Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.
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nf-core/panoramaseq
0.0.0-ea147c5
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n/a
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a pipeline to process sequencing based spatial transccriptomics data from in-situ arrays
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nf-core/pathogenepidemiology
0.0.0-8261242
|
n/a
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[DEVELOPMENT UNDERWAY] A profile-based pipeline for genomic epidemiological analysis of predefined pathogens.
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