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nf-core/ampliseq
3.0.0
|
16s 18s amplicon-sequencing edna
+12
|
Amplicon sequencing analysis workflow using DADA2 and QIIME2
|
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nf-core/bacass
2.6.1
|
assembly bacterial-genomes denovo denovo-assembly
+4
|
Simple bacterial assembly and annotation pipeline
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nf-core/deepmutscan
0.0.0-56e2861
|
community-workflow deep-mutational-scanning genotype-phenotype shotgun-sequencing
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nf-core/deepmutscan is a reproducible, scalable, and community-curated pipeline for analyzing deep mutational scanning (DMS) data using shotgun DNA sequencing.
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nf-core/denovohybrid
0.0.0-9299621
|
assembly denovo denovo-assembly genome-assembly
+4
|
UNDER CONSTRUCTION: Hybrid genome assembly pipeline using a combination of long and short sequencing reads
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nf-core/exoseq
0.0.0-600fad3
|
exome exome-sequencing genomics variant-calling
|
Please consider using/contributing to https://github.com/nf-core/sarek
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|
nf-core/mag
5.5.0
|
annotation assembly binning long-read-sequencing
+4
|
Assembly and binning of metagenomes
|
|
nf-core/methylseq
4.2.0
|
bisulfite-sequencing dna-methylation em-seq epigenome
+6
|
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark/bwa-meth + MethylDackel or bwa-mem + rastair
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nf-core/phaseimpute
1.1.0
|
genomics genotype imputation low-pass-sequencing
+1
|
A bioinformatics pipeline to phase and impute genetic data
|
|
nf-core/sammyseq
0.0.0-023aff4
|
3d-genome chromatin dna epigenetics
+6
|
Pipeline for Sequential Analysis of MacroMolecules accessibilitY sequencing (SAMMY-seq) data, to analyze chromatin state.
|
|
nf-core/sarek
3.10.0
|
annotation cancer gatk4 genomics
+7
|
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
|
|
nf-core/scflow
0.0.0-c2c9728
|
rnaseq single-cell single-nuclei single-nuclei-rna-sequencing
|
Please consider using/contributing to https://github.com/nf-core/scdownstream
|
|
nf-core/scnanoseq
1.3.0
|
10xgenomics long-read-sequencing nanopore rna-seq
+3
|
Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
|
|
nf-core/ssds
0.0.0-0cc3ee6
|
chip-ssds dmc1-ssds dsbs ori-ssds
+4
|
Single-stranded DNA Sequencing (SSDS) nf-core pipeline
|
|
nf-core/viralrecon
3.0.0
|
amplicon artic assembly covid-19
+11
|
Assembly and intrahost/low-frequency variant calling for viral samples
|