|
nf-core/ribomsqc
1.0.0
|
n/a
|
QC pipeline that monitors mass spectrometer performance in ribonucleoside analysis
|
|
nf-core/riboseq
2.0.0
|
n/a
|
Pipeline for the analysis of ribosome profiling, or Ribo-seq (also named ribosome footprinting) data.
|
|
nf-core/rnadnavar
1.0.0
|
n/a
|
Pipeline for RNA and DNA integrated analysis for somatic mutation detection
|
|
nf-core/rnafusion
4.1.3
|
fusion fusion-genes gene-fusion rna
+1
|
RNA-seq analysis pipeline for detection of gene-fusions
|
|
nf-core/rnaseq
3.27.0
|
rna rna-seq
|
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
|
|
nf-core/rnasplice
1.0.4
|
alternative-splicing rna rna-seq splicing
|
rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis
|
|
nf-core/rnastructurome
1.0.0
|
dms map rna-structure rnacentral
+3
|
a bioinformatics pipeline for analysing chemical high-throughput RNA structure-probing data
|
|
nf-core/rnavar
1.3.0
|
gatk4 rna rnaseq variant-calling
+1
|
gatk4 RNA variant calling pipeline
|
|
nf-core/sammyseq
0.0.0-023aff4
|
3d-genome chromatin dna epigenetics
+6
|
Pipeline for Sequential Analysis of MacroMolecules accessibilitY sequencing (SAMMY-seq) data, to analyze chromatin state.
|
|
nf-core/sarek
3.10.0
|
annotation cancer gatk4 genomics
+7
|
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
|
|
nf-core/scdownstream
0.0.0-3c2644c
|
clustering dimensionality-reduction integration quality-control
+2
|
A single cell transcriptomics pipeline for QC, integration and making the data presentable
|
|
nf-core/scflow
0.0.0-c2c9728
|
rnaseq single-cell single-nuclei single-nuclei-rna-sequencing
|
Please consider using/contributing to https://github.com/nf-core/scdownstream
|
|
nf-core/scnanoseq
1.3.0
|
10xgenomics long-read-sequencing nanopore rna-seq
+3
|
Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
|
|
nf-core/scrnaseq
4.2.0
|
10x-genomics 10xgenomics alevin bustools
+5
|
Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-droplet detection
|
|
nf-core/seqinspector
1.1.2
|
genomics quality-control
|
Dedicated QC-only pipeline for sequencing data. The pipeline will run a (potentially large) set of QC tools and can output global and group specific Multiqc reports. The pipeline is targeting core facilities or research groups with larger sequencing throughput.
|
|
nf-core/seqsubmit
1.0.0
|
n/a
|
nf-core pipeline for data submission to ENA
|
|
nf-core/slamseq
1.0.0
|
differential-expression quantseq slamseq transcriptomics
|
SLAMSeq processing and analysis pipeline
|
|
nf-core/smartseq2
0.0.0-6d47483
|
n/a
|
A pipeline for processing single cell RNA-seq data generated with the SmartSeq2 protocol.
|
|
nf-core/smrnaseq
2.4.1
|
small-rna smrna-seq
|
A small-RNA sequencing analysis pipeline
|
|
nf-core/sopa
1.0.1
|
segmentation spatial-omics spatial-proteomics spatial-transcriptomics
+1
|
Nextflow version of Sopa - spatial omics pipeline and analysis
|